The engine turns, sometimes there is a backfire. Could the crank be off 360 degrees? How do I verify the #1 is @ TDC?
LOL. no, it's not possible for the crank to be 360 degrees off.
Is it possible that the engine is not turning at the propper speed to start? We put in a new starter also a new water pump.
No, a good running EJ should fire up if it's spinning at all.
How many times around does it take for the timing belt marks and sprocket marks to line up again all together?? 
Okay, here's the heart of the problem. You're getting overly confused by complicating this. The lines
on the belt are IRRELAVANT. I ignore them entirely, as often they are wrong. Especially if it's an aftermarket belt.
Ignore the notches on the timing cover as well. The covers distort with time and heat. Just go by when the hash marks(not arrows) on the pulleys are excactly straight up(a line drawn through the center of the pulley and the mark should be excactly vertical).
All that matters is the alignment marks of the pulleys are all up and excactly vertical all 3 at the same time when you install the belt.
Note also that the belt install marks on the pulleys
ARE NOT TDC for #1. IIRC It's about half way through it's compression stroke. The reason for this is to position the majority of the cam lobes in an *unloaded* state for belt installation. This lessens the tendancy of the CAMs to *snap* off the mark.