I was at the junk yard a few weeks ago and found a non ac Loyale, so I grabbed the alternator brackets and hardware. I'm in the process of replacing timing belts on my car so I figured now would be a good time to get rid of the ac. My question is, will the non ac brackets work with the water pump on my car? Or will I have to buy a water pump for a non ac car because of the shaft size?

I think it will work with my water pump, I just got a driver cam tower off the car I got the brackets from and it's power steering and water pump have double pulleys too.

Water pump will be fine. 

Full AC delete includes removing the evaporator unit from under the dashboard and putting the piece of ducting in its place, and pulling the wiring/replacing the AC fan switch combo. 

Cheers 

Bennie

At the moment I'm just going to get rid of everything under the hood and cap off the lines just to clean it up.

Are you going to save the freon if you have any?

There's nothing in it.