If the flywheel marking is at 0 should the timing marks be pointing directly up passenger side and pointing directly down driver side or vise versa?

The timing mark on the flywheel for aligning the timing belts is the middle of the 3 lines.   | | |    NOT the 0 degrees mark for timing.

 

One side will be up, one down, with each revolution of the crank.

 

There is a write up somewhere on the forum.   There is a sequence to follow to get them on correctly.